Transcript: lnc-NBAS-5:1

Basic information

LNCipedia transcript ID: lnc-NBAS-5:1 
LNCipedia gene ID: lnc-NBAS-5
Location (hg38): chr2:15997049-16062885
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 517 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00003212; ENST00000422415; ENST00000422415.1; AC010145.4-001; OTTHUMT00000323749.1; NONHSAT069312
Alternative gene names: XLOC_001998; linc-NBAS-2; ENSG00000226764; AC010145.4; ENSG00000226764.1; OTTHUMG00000151751.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.5148 non-coding 
CPAT coding probability 16.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NBAS-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NBAS-5:1
3.1 lnc-NBAS-5:1
4.0 lnc-NBAS-5:1
4.1 lnc-NBAS-5:1
5.0 lnc-NBAS-5:1
5.1 lnc-RAD51AP2-20:1
5.2 lnc-NBAS-5:1