Transcript: lnc-NBDY-3:1

Basic information

LNCipedia transcript ID: lnc-NBDY-3:1 
LNCipedia gene ID: lnc-NBDY-3
Ensembl Gene ID: ENSG00000224799
Ensembl Transcript ID: ENST00000430456
Location (hg38): chrX:56973510-56974796
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 644 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00016987; ENST00000430456.1; RP11-445O16.3-001; OTTHUMT00000056910.1; NONHSAT137278
Alternative gene names: XLOC_007995; linc-FAAH2-3; ENSG00000224799.1; RP11-445O16.3; OTTHUMG00000021679.1; AL139397.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.9288 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NBDY-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAAH2-3:1
3.1 lnc-FAAH2-3:1
4.0 lnc-FAAH2-3:1
4.1 lnc-FAAH2-3:1
5.0 lnc-FAAH2-3:1
5.1 lnc-MAGED2-17:1
5.2 lnc-NBDY-3:1