Transcript: lnc-NBPF1-2:13

Basic information

LNCipedia transcript ID: lnc-NBPF1-2:13 
LNCipedia gene ID: lnc-NBPF1-2
Location (hg38): chr1:16566440-16579367
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1069 bp
Exons: 9
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000432949; ENST00000432949.1; NBPF1-204
Alternative gene names: ENSG00000219481; NBPF1; ENSG00000219481.3; OTTHUMG00000002487.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.6378 non-coding 
CPAT coding probability 99.95% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NBPF1-2:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPATA21-2:5
3.1 lnc-SPATA21-2:5
4.0 lnc-SPATA21-2:5
4.1 lnc-SPATA21-2:5
5.0 lnc-SPATA21-2:5
5.1 lnc-LRRC38-44:13
5.2 lnc-NBPF1-2:13