Transcript: lnc-NBPF11-1:28

Basic information

LNCipedia transcript ID: lnc-NBPF11-1:28 
LNCipedia gene ID: lnc-NBPF11-1
Location (hg38): chr1:148243642-148246638
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2997 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000074857.1|FTMT20200006652.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 48.4802 non-coding 
CPAT coding probability 8.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NBPF11-1:28 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-NBPF24-1:22
5.0 lnc-NBPF24-1:22
5.1 lnc-PPIAL4G-29:13
5.2 lnc-NBPF11-1:28