Transcript: lnc-NBPF11-1:40

Basic information

LNCipedia transcript ID: lnc-NBPF11-1:40 
LNCipedia gene ID: lnc-NBPF11-1
Location (hg38): chr1:148196004-148200084
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 368 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000443671; ENST00000443671.1; XXyac-YX155B6.6-001; OTTHUMT00000101758.1; NONHSAT006075
Alternative gene names: ENSG00000226335; XXyac-YX155B6.6; ENSG00000226335.1; OTTHUMG00000043432.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -348.8718 non-coding 
CPAT coding probability 2.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NBPF11-1:40 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NBPF24-1:1
3.1 lnc-NBPF24-1:1
4.0 lnc-NBPF24-1:1
4.1 lnc-NBPF24-1:1
5.0 lnc-NBPF24-1:1
5.1 lnc-PPIAL4G-29:40
5.2 lnc-NBPF11-1:40