Transcript: lnc-NBPF15-1:1

Basic information

LNCipedia transcript ID: lnc-NBPF15-1:1 
LNCipedia gene ID: lnc-NBPF15-1
Location (hg38): chr1:144418123-144419256
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 365 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000415104; ENST00000415104.1; RP11-666A1.5-001; OTTHUMT00000097602.1; NONHSAT006140
Alternative gene names: ENSG00000237253; RP11-666A1.5; ENSG00000237253.1; OTTHUMG00000040559.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -44.6492 non-coding 
CPAT coding probability 0.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NBPF15-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NBPF15-1:1
3.1 lnc-NBPF15-1:1
4.0 lnc-NBPF15-1:1
4.1 lnc-NBPF15-1:1
5.0 lnc-NBPF15-1:1
5.1 lnc-FAM72C-1:3
5.2 lnc-NBPF15-1:1