Transcript: lnc-NBPF9-6:1

Basic information

LNCipedia transcript ID: lnc-NBPF9-6:1 
LNCipedia gene ID: lnc-NBPF9-6
Ensembl Gene ID: ENSG00000255148
Ensembl Transcript ID: ENST00000532137
Location (hg38): chr1:149018671-149026269
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 554 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000532137.1; RP4-791M13.4-001; OTTHUMT00000385427.1; NONHSAT005855
Alternative gene names: ENSG00000255148.1; RP4-791M13.4; OTTHUMG00000165625.1; ENSG00000255148.2; AC239802.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.003 non-coding 
CPAT coding probability 19.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NBPF9-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NBPF9-1:1
4.0 lnc-NBPF9-6:1
4.1 lnc-NBPF9-6:1
5.0 lnc-NBPF9-6:1
5.1 lnc-PPIAL4G-40:1
5.2 lnc-NBPF9-6:1