Transcript: lnc-NCBP3-1:2

Basic information

LNCipedia transcript ID: lnc-NCBP3-1:2 
LNCipedia gene ID: lnc-NCBP3-1
Location (hg38): chr17:3802165-3803382
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 518 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000572988.1; CTD-3195I5.5-001; OTTHUMT00000438382.1
Alternative gene names: ENSG00000262194.1; CTD-3195I5.5; OTTHUMG00000177671.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.093 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NCBP3-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ITGAE-1:2
4.0 lnc-ITGAE-1:2
4.1 lnc-ITGAE-1:2
5.0 lnc-ITGAE-1:2
5.1 lnc-RPH3AL-98:2
5.2 lnc-NCBP3-1:2