Transcript: lnc-NCOA3-3:1

Basic information

LNCipedia transcript ID: lnc-NCOA3-3:1 
LNCipedia gene ID: lnc-NCOA3-3
Ensembl Gene ID: ENSG00000231119
Ensembl Transcript ID: ENST00000413818
RefSeq ID: NR_134501
Location (hg38): chr20:47352561-47354633
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1809 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000413818; ENST00000413818.2; RP4-569M23.2-001; OTTHUMT00000079599.2; NONHSAT080052; NR_134501.1
Alternative gene names: ENSG00000231119; RP4-569M23.2; ENSG00000231119.2; OTTHUMG00000032668.2; AL031666.1; LOC101927377


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.3484 non-coding 
CPAT coding probability 29.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NCOA3-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NCOA3-2:1
3.1 lnc-NCOA3-3:1
4.0 lnc-NCOA3-3:1
4.1 lnc-NCOA3-3:1
5.0 lnc-NCOA3-3:1
5.1 lnc-STK4-73:1
5.2 lnc-NCOA3-3:1