Transcript: lnc-NCOA3-4:9

Basic information

LNCipedia transcript ID: lnc-NCOA3-4:9 
LNCipedia gene ID: lnc-NCOA3-4
Location (hg38): chr20:47792322-47799772
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1447 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028182; NONHSAT080085
Alternative gene names: XLOC_013541; linc-ARFGEF2-14


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.6901 non-coding 
CPAT coding probability 1.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NCOA3-4:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NCOA3-1:1
3.1 lnc-NCOA3-2:1
4.0 lnc-NCOA3-4:9
4.1 lnc-NCOA3-4:9
5.0 lnc-NCOA3-4:9
5.1 lnc-SNAI1-63:4
5.2 lnc-NCOA3-4:9