Transcript: lnc-NCOA3-6:1

Basic information

LNCipedia transcript ID: lnc-NCOA3-6:1 
LNCipedia gene ID: lnc-NCOA3-6
Ensembl Gene ID: ENSG00000234967
Ensembl Transcript ID: ENST00000431915
Location (hg38): chr20:47950799-47952055
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 425 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00027938; ENST00000431915; ENST00000431915.1; RP11-347D21.1-001; OTTHUMT00000079611.1; NONHSAT080110
Alternative gene names: XLOC_013544; linc-ARFGEF2-11; ENSG00000234967; RP11-347D21.1; ENSG00000234967.1; OTTHUMG00000032676.1; AL357558.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -129.9071 non-coding 
CPAT coding probability 3.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NCOA3-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NCOA3-5:1
3.1 lnc-NCOA3-6:1
4.0 lnc-NCOA3-6:1
4.1 lnc-NCOA3-6:1
5.0 lnc-NCOA3-6:1
5.1 lnc-SNAI1-55:1
5.2 lnc-NCOA3-6:1