Transcript: lnc-NCOA3-6:2

Basic information

LNCipedia transcript ID: lnc-NCOA3-6:2 
LNCipedia gene ID: lnc-NCOA3-6
Location (hg38): chr20:47950810-47953947
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 451 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028556; NONHSAT080111
Alternative gene names: XLOC_013544; linc-ARFGEF2-11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.6006 non-coding 
CPAT coding probability 1.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NCOA3-6:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NCOA3-5:2
3.1 lnc-NCOA3-6:2
4.0 lnc-NCOA3-6:2
4.1 lnc-NCOA3-6:2
5.0 lnc-NCOA3-6:2
5.1 lnc-SNAI1-55:2
5.2 lnc-NCOA3-6:2