Transcript: lnc-NCOA3-7:3

Basic information

LNCipedia transcript ID: lnc-NCOA3-7:3 
LNCipedia gene ID: lnc-NCOA3-7
Ensembl Gene ID: ENSG00000228503
Ensembl Transcript ID: ENST00000416646
Location (hg38): chr20:47958022-47958603
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 456 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00027939; ENST00000416646; ENST00000416646.1; RP11-347D21.2-001; OTTHUMT00000079612.1; NONHSAT147168
Alternative gene names: XLOC_013545; linc-ARFGEF2-10; ENSG00000228503; RP11-347D21.2; ENSG00000228503.1; OTTHUMG00000032677.1; AL357558.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.6483 non-coding 
CPAT coding probability 7.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NCOA3-7:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NCOA3-6:3
3.1 lnc-NCOA3-7:3
4.0 lnc-NCOA3-7:3
4.1 lnc-NCOA3-7:3
5.0 lnc-NCOA3-7:3
5.1 lnc-SNAI1-54:3
5.2 lnc-NCOA3-7:3