Transcript: lnc-NCOA3-9:1

Basic information

LNCipedia transcript ID: lnc-NCOA3-9:1 
LNCipedia gene ID: lnc-NCOA3-9
Location (hg38): chr20:48024788-48074186
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4229 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028194; NONHSAT080117
Alternative gene names: XLOC_013547; linc-ARFGEF2-8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.7252 non-coding 
CPAT coding probability 4.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NCOA3-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NCOA3-8:1
3.1 lnc-NCOA3-9:1
4.0 lnc-NCOA3-9:1
4.1 lnc-NCOA3-9:1
5.0 lnc-NCOA3-9:1
5.1 lnc-SNAI1-51:1
5.2 lnc-NCOA3-9:1