Transcript: lnc-NCOA3-9:5

Basic information

LNCipedia transcript ID: lnc-NCOA3-9:5 
LNCipedia gene ID: lnc-NCOA3-9
Location (hg38): chr20:48069404-48071338
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 517 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028196; NONHSAT080121
Alternative gene names: XLOC_013547; linc-ARFGEF2-8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.6912 non-coding 
CPAT coding probability 2.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NCOA3-9:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NCOA3-8:5
3.1 lnc-NCOA3-9:5
4.0 lnc-NCOA3-9:5
4.1 lnc-NCOA3-9:5
5.0 lnc-NCOA3-9:5
5.1 lnc-SNAI1-51:10
5.2 lnc-NCOA3-9:5