Transcript: lnc-NCOA3-9:7

Basic information

LNCipedia transcript ID: lnc-NCOA3-9:7 
LNCipedia gene ID: lnc-NCOA3-9
Location (hg38): chr20:48025219-48043698
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 344 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000053438.1|HBMT00000890946.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -7.5839 non-coding 
CPAT coding probability 4.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NCOA3-9:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-NCOA3-9:7
5.0 lnc-NCOA3-9:7
5.1 lnc-SNAI1-51:2
5.2 lnc-NCOA3-9:7