Transcript: lnc-NCOR2-1:2

Basic information

LNCipedia transcript ID: lnc-NCOR2-1:2 
LNCipedia gene ID: lnc-NCOR2-1
Location (hg38): chr12:124257885-124265447
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 265 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020966; NONHSAT031657
Alternative gene names: XLOC_010235; linc-CCDC92-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.6095 non-coding 
CPAT coding probability 7.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NCOR2-1:2 no no no no

Available literature

  1. Song (2016), Identification of differentially expressed signatures of long non-coding RNAs associated with different metastatic potentials in gastric cancer., J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NCOR2-1:2
3.1 lnc-NCOR2-1:2
4.0 lnc-NCOR2-1:2
4.1 lnc-NCOR2-1:2
5.0 lnc-NCOR2-1:2
5.1 lnc-NCOR2-1:2
5.2 lnc-NCOR2-1:2