Transcript: lnc-NCR3LG1-1:2

Basic information

LNCipedia transcript ID: lnc-NCR3LG1-1:2 
LNCipedia gene ID: lnc-NCR3LG1-1
Ensembl Gene ID: ENSG00000260196
Ensembl Transcript ID: ENST00000568280
Location (hg38): chr11:17380649-17383531
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2883 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568280.1; RP1-239B22.5-001; OTTHUMT00000421715.1; NONHSAT018228
Alternative gene names: ENSG00000260196.1; RP1-239B22.5; OTTHUMG00000173015.1; AC124798.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.4877 non-coding 
CPAT coding probability 27.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NCR3LG1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP1-239B22.1.1-1:1
4.0 lnc-RP1-239B22.1.1-1:1
4.1 lnc-RP1-239B22.1.1-1:1
5.0 lnc-RP1-239B22.1.1-1:1
5.1 lnc-NUCB2-1:3
5.2 lnc-NCR3LG1-1:2