Transcript: lnc-NDC80-4:1

Basic information

LNCipedia transcript ID: lnc-NDC80-4:1 
LNCipedia gene ID: lnc-NDC80-4
Ensembl Gene ID: ENSG00000264080
Ensembl Transcript ID: ENST00000583827
Location (hg38): chr18:1780329-1782064
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 574 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000583827.1; CTD-2015H3.1-001; OTTHUMT00000441766.1; NONHSAT056911
Alternative gene names: ENSG00000264080.1; CTD-2015H3.1; OTTHUMG00000178382.1; AP005057.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.0672 non-coding 
CPAT coding probability 0.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NDC80-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NDC80-4:1
4.0 lnc-NDC80-4:1
4.1 lnc-NDC80-4:1
5.0 lnc-NDC80-4:1
5.1 lnc-RIOK3-295:1
5.2 lnc-NDC80-4:1