Transcript: lnc-NDFIP2-11:2

Basic information

LNCipedia transcript ID: lnc-NDFIP2-11:2 
LNCipedia gene ID: lnc-NDFIP2-11
Location (hg38): chr13:81283173-81302407
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 290 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00021578; ENST00000458480; ENST00000458480.1; RP11-452B18.2-001; OTTHUMT00000045393.1; NONHSAT034531
Alternative gene names: XLOC_010456; linc-SLITRK5-7; ENSG00000229309; RP11-452B18.2; ENSG00000229309.1; OTTHUMG00000017146.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -238.8475 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NDFIP2-11:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NDFIP2-11:2
3.1 lnc-NDFIP2-11:2
4.0 lnc-NDFIP2-11:2
4.1 lnc-NDFIP2-11:2
5.0 lnc-NDFIP2-11:2
5.1 lnc-COL4A2-193:4
5.2 lnc-NDFIP2-11:2