Transcript: lnc-NDFIP2-7:10

Basic information

LNCipedia transcript ID: lnc-NDFIP2-7:10 
HGNC Gene Symbol: lnc-NDFIP2-7    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1080
Ensembl Gene ID: ENSG00000281721
Ensembl Transcript ID: ENST00000627044
Location (hg38): chr13:80011077-80028283
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2242 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000627044.1
Alternative gene names: ENSG00000281721.1; LINC01080; AL158064.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -54.4041 non-coding 
CPAT coding probability 6.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NDFIP2-7:10 no no no no

Available literature

  1. Luo (2015), Lack of association of a genetic variant in the long intergenic noncoding RNA (linc01080) with Alzheimer's disease and amnestic mild cognitive impairment in Han Chinese., Int. J. Neurosci.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-NDFIP2-7:10
4.1 lnc-NDFIP2-7:10
5.0 lnc-NDFIP2-7:10
5.1 lnc-COL4A2-200:8
5.2 lnc-NDFIP2-7:10