Transcript: lnc-NDFIP2-7:5

Basic information

LNCipedia transcript ID: lnc-NDFIP2-7:5 
LNCipedia gene ID: lnc-NDFIP2-7
RefSeq ID: NR_104138
Location (hg38): chr13:80011077-80026663
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 622 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104138; NR_104138.1
Alternative gene names: LINC01080


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.4041 non-coding 
CPAT coding probability 7.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NDFIP2-7:5 no no no no

Available literature

  1. Luo (2015), Lack of association of a genetic variant in the long intergenic noncoding RNA (linc01080) with Alzheimer's disease and amnestic mild cognitive impairment in Han Chinese., Int. J. Neurosci.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NDFIP2-7:5
4.0 lnc-NDFIP2-7:5
4.1 lnc-NDFIP2-7:5
5.0 lnc-NDFIP2-7:5
5.1 lnc-COL4A2-200:7
5.2 lnc-NDFIP2-7:5