Transcript: lnc-NDFIP2-7:7

Basic information

LNCipedia transcript ID: lnc-NDFIP2-7:7 
LNCipedia gene ID: lnc-NDFIP2-7
Location (hg38): chr13:79872586-79918035
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 981 bp
Exons: 6
Sources: Broad Institute
Alternative transcript names: TCONS_00021500
Alternative gene names: XLOC_010450; linc-SLITRK5-12


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -146.5371 non-coding 
CPAT coding probability 2.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NDFIP2-7:7 no no no no

Available literature

  1. Luo (2015), Lack of association of a genetic variant in the long intergenic noncoding RNA (linc01080) with Alzheimer's disease and amnestic mild cognitive impairment in Han Chinese., Int. J. Neurosci.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NDFIP2-6:1
3.1 lnc-NDFIP2-6:1
4.0 lnc-NDFIP2-7:7
4.1 lnc-NDFIP2-7:7
5.0 lnc-NDFIP2-7:7
5.1 lnc-COL4A2-200:2
5.2 lnc-NDFIP2-7:7