Transcript: lnc-NDUFS6-3:1

Basic information

LNCipedia transcript ID: lnc-NDUFS6-3:1 
LNCipedia gene ID: lnc-NDUFS6-3
Ensembl Gene ID: ENSG00000260066
Ensembl Transcript ID: ENST00000565428
Location (hg38): chr5:1725149-1728172
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3024 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565428.1; CTD-2587M23.1-001; OTTHUMT00000423201.1; NONHSAT100067
Alternative gene names: ENSG00000260066.1; CTD-2587M23.1; OTTHUMG00000173459.1; AC112176.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 58.6933 non-coding 
CPAT coding probability 57.72% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NDUFS6-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NDUFS6-3:1
4.0 lnc-NDUFS6-3:1
4.1 lnc-NDUFS6-3:1
5.0 lnc-NDUFS6-3:1
5.1 lnc-CARD6-369:1
5.2 lnc-NDUFS6-3:1