Transcript: lnc-NEFL-6:18

Basic information

LNCipedia transcript ID: lnc-NEFL-6:18 
LNCipedia gene ID: lnc-NEFL-6
Ensembl Gene ID: ENSG00000253535
Ensembl Transcript ID: ENST00000518988
Location (hg38): chr8:24295814-24387515
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 741 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518988.1; RP11-624C23.1-001; OTTHUMT00000375554.1; NONHSAT125597; ENST00000518988.5
Alternative gene names: ENSG00000253535.1; RP11-624C23.1; OTTHUMG00000163790.3; ENSG00000253535.5; AC120193.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.0304 non-coding 
CPAT coding probability 1.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NEFL-6:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-STC1-2:3
4.0 lnc-STC1-2:3
4.1 lnc-STC1-2:3
5.0 lnc-STC1-2:3
5.1 lnc-ENTPD4-11:18
5.2 lnc-NEFL-6:18