Transcript: lnc-NEK3-1:1

Basic information

LNCipedia transcript ID: lnc-NEK3-1:1 
LNCipedia gene ID: lnc-NEK3-1
Location (hg38): chr13:52219344-52334277
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2680 bp
Exons: 26
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000422308.1; RP11-64P12.8-002; OTTHUMT00000045055.1
Alternative gene names: ENSG00000217576.4; RP11-64P12.8; OTTHUMG00000016962.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 523.1411 coding 
CPAT coding probability 90.68% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NEK3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NEK3-1:1
4.0 lnc-NEK3-1:1
4.1 lnc-NEK3-1:1
5.0 lnc-NEK3-1:1
5.1 lnc-CCDC169-189:1
5.2 lnc-NEK3-1:1