Transcript: lnc-NEO1-1:1

Basic information

LNCipedia transcript ID: lnc-NEO1-1:1 
LNCipedia gene ID: lnc-NEO1-1
Ensembl Gene ID: ENSG00000259650
Ensembl Transcript ID: ENST00000558742
Location (hg38): chr15:73335260-73342357
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 341 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558742.1; RP11-272D12.1-002; OTTHUMT00000419067.1; NONHSAT047144
Alternative gene names: ENSG00000259650.1; RP11-272D12.1; OTTHUMG00000172548.1; AC068397.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.7535 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NEO1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NEO1-1:1
4.0 lnc-NEO1-1:1
4.1 lnc-NEO1-1:1
5.0 lnc-NEO1-1:1
5.1 lnc-BBS4-1:9
5.2 lnc-NEO1-1:1