Transcript: lnc-NEU2-1:2

Basic information

LNCipedia transcript ID: lnc-NEU2-1:2 
LNCipedia gene ID: lnc-NEU2-1
Ensembl Gene ID: ENSG00000222001
Ensembl Transcript ID: ENST00000409905
RefSeq ID: NR_136325
Location (hg38): chr2:233012614-233015885
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 643 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000409905.1; NR_136325.1
Alternative gene names: ENSG00000222001.2; AC106876.2; AC106876.1; LOC101928881


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -75.2391 non-coding 
CPAT coding probability 10.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NEU2-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC106876.2.1-1:2
4.1 lnc-AC106876.2.1-1:2
5.0 lnc-AC106876.2.1-1:2
5.1 lnc-B3GNT7-39:1
5.2 lnc-NEU2-1:2