Transcript: lnc-NEURL1B-2:1

Basic information

LNCipedia transcript ID: lnc-NEURL1B-2:1 
LNCipedia gene ID: lnc-NEURL1B-2
Ensembl Gene ID: ENSG00000253295
Ensembl Transcript ID: ENST00000518941
Location (hg38): chr5:172758226-172762556
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 472 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518941.1; RP11-779O18.1-001; OTTHUMT00000372475.1; NONHSAT147367
Alternative gene names: ENSG00000253295.1; RP11-779O18.1; OTTHUMG00000163290.1; AC022217.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 21.8535 non-coding 
CPAT coding probability 32.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NEURL1B-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NEURL1B-2:1
4.0 lnc-NEURL1B-2:1
4.1 lnc-NEURL1B-2:1
5.0 lnc-NEURL1B-2:1
5.1 lnc-ATP6V0E1-13:2
5.2 lnc-NEURL1B-2:1