Transcript: lnc-NEUROD4-1:1

Basic information

LNCipedia transcript ID: lnc-NEUROD4-1:1 
LNCipedia gene ID: lnc-NEUROD4-1
Ensembl Gene ID: ENSG00000257870
Ensembl Transcript ID: ENST00000547559
Location (hg38): chr12:55009746-55014247
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 592 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000547559; ENST00000547559.1; RP11-616L12.1-001; OTTHUMT00000406103.1; NONHSAT028650
Alternative gene names: ENSG00000257870; RP11-616L12.1; ENSG00000257870.1; OTTHUMG00000169825.1; AC027287.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.8086 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NEUROD4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NEUROD4-1:1
3.1 lnc-NEUROD4-1:1
4.0 lnc-NEUROD4-1:1
4.1 lnc-NEUROD4-1:1
5.0 lnc-NEUROD4-1:1
5.1 lnc-OR9K2-1:1
5.2 lnc-NEUROD4-1:1