Transcript: lnc-NFAT5-2:1

Basic information

LNCipedia transcript ID: lnc-NFAT5-2:1 
LNCipedia gene ID: lnc-NFAT5-2
Ensembl Gene ID: ENSG00000260108
Ensembl Transcript ID: ENST00000567834
Location (hg38): chr16:69463844-69466264
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2421 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567834.1; RP11-140H17.1-001; OTTHUMT00000433711.1; NONHSAT143359
Alternative gene names: ENSG00000260108.1; RP11-140H17.1; OTTHUMG00000176778.1; AC026464.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -84.5913 non-coding 
CPAT coding probability 2.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NFAT5-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NFAT5-2:1
4.0 lnc-NFAT5-2:1
4.1 lnc-NFAT5-2:1
5.0 lnc-NFAT5-2:1
5.1 lnc-WWP2-12:1
5.2 lnc-NFAT5-2:1