Transcript: lnc-NFATC1-1:2

Basic information

LNCipedia transcript ID: lnc-NFATC1-1:2 
LNCipedia gene ID: lnc-NFATC1-1
Ensembl Gene ID: ENSG00000267287
Ensembl Transcript ID: ENST00000586798
Location (hg38): chr18:79576460-79579808
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3349 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT060043; ENST00000586798.1
Alternative gene names: ENSG00000267287.1; RP11-567M16.1; AC068473.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 55.5085 non-coding 
CPAT coding probability 28.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NFATC1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NFATC1-1:2
4.0 lnc-NFATC1-1:2
4.1 lnc-NFATC1-1:2
5.0 lnc-NFATC1-1:2
5.1 lnc-KCNG2-9:1
5.2 lnc-NFATC1-1:2