Transcript: lnc-NGFR-3:1

Basic information

LNCipedia transcript ID: lnc-NGFR-3:1 
LNCipedia gene ID: lnc-NGFR-3
Ensembl Gene ID: ENSG00000248714
Ensembl Transcript ID: ENST00000502823
RefSeq ID: NR_110884
Location (hg38): chr17:49361165-49366115
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 545 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000502823; ENST00000502823.1; RP11-1079K10.3-002; OTTHUMT00000364660.1; NONHSAT054528; NR_110884; ENST00000502823.5; NR_110884.1
Alternative gene names: ENSG00000248714; RP11-1079K10.3; ENSG00000248714.2; OTTHUMG00000161365.1; ENSG00000248714.6; AC091180.2; LOC102724596


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.2723 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NGFR-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NGFR-1:1
3.1 lnc-NGFR-3:1
4.0 lnc-NGFR-3:1
4.1 lnc-NGFR-3:1
5.0 lnc-NGFR-3:1
5.1 lnc-ACSF2-35:4
5.2 lnc-NGFR-3:1