Transcript: lnc-NGFR-3:2

Basic information

LNCipedia transcript ID: lnc-NGFR-3:2 
LNCipedia gene ID: lnc-NGFR-3
Ensembl Gene ID: ENSG00000248714
Ensembl Transcript ID: ENST00000510360
Location (hg38): chr17:49361189-49369998
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 304 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000510360; ENST00000510360.2; RP11-1079K10.3-001; OTTHUMT00000364659.1; NONHSAT054529; ENST00000510360.6
Alternative gene names: ENSG00000248714; RP11-1079K10.3; ENSG00000248714.2; OTTHUMG00000161365.1; ENSG00000248714.6; AC091180.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.2723 non-coding 
CPAT coding probability 2.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NGFR-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NGFR-1:2
3.1 lnc-NGFR-3:2
4.0 lnc-NGFR-3:2
4.1 lnc-NGFR-3:2
5.0 lnc-NGFR-3:2
5.1 lnc-ACSF2-35:11
5.2 lnc-NGFR-3:2