Transcript: lnc-NGFR-3:3

Basic information

LNCipedia transcript ID: lnc-NGFR-3:3 
LNCipedia gene ID: lnc-NGFR-3
Ensembl Gene ID: ENSG00000248714
Ensembl Transcript ID: ENST00000507337
Location (hg38): chr17:49362382-49366092
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 601 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000507337; ENST00000507337.1; RP11-1079K10.3-003; OTTHUMT00000364661.1; NONHSAT054530
Alternative gene names: ENSG00000248714; RP11-1079K10.3; ENSG00000248714.2; OTTHUMG00000161365.1; ENSG00000248714.6; AC091180.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 59.0891 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NGFR-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NGFR-1:3
3.1 lnc-NGFR-3:3
4.0 lnc-NGFR-3:3
4.1 lnc-NGFR-3:3
5.0 lnc-NGFR-3:3
5.1 lnc-ACSF2-35:13
5.2 lnc-NGFR-3:3