Transcript: lnc-NHLH2-1:1

Basic information

LNCipedia transcript ID: lnc-NHLH2-1:1 
LNCipedia gene ID: lnc-NHLH2-1
Location (hg38): chr1:115920768-115924168
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2366 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001635; NONHSAT005401
Alternative gene names: XLOC_000972; linc-NHLH2-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.034 non-coding 
CPAT coding probability 25.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NHLH2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NHLH2-1:1
3.1 lnc-NHLH2-1:1
4.0 lnc-NHLH2-1:1
4.1 lnc-NHLH2-1:1
5.0 lnc-NHLH2-1:1
5.1 lnc-CD58-15:5
5.2 lnc-NHLH2-1:1