Transcript: lnc-NHLH2-1:2

Basic information

LNCipedia transcript ID: lnc-NHLH2-1:2 
LNCipedia gene ID: lnc-NHLH2-1
RefSeq ID: NR_125970
Location (hg38): chr1:115922573-115977276
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 578 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125970; NR_125970.1
Alternative gene names: LOC101928977


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -110.3745 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NHLH2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NHLH2-1:2
4.0 lnc-NHLH2-1:2
4.1 lnc-NHLH2-1:2
5.0 lnc-NHLH2-1:2
5.1 lnc-CD58-15:1
5.2 lnc-NHLH2-1:2