Transcript: lnc-NHLH2-1:4

Basic information

LNCipedia transcript ID: lnc-NHLH2-1:4 
LNCipedia gene ID: lnc-NHLH2-1
Location (hg38): chr1:115922158-115976837
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 884 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000072770.1|FTMT20100110071.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -110.194 non-coding 
CPAT coding probability 1.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NHLH2-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-NHLH2-1:4
5.0 lnc-NHLH2-1:4
5.1 lnc-CD58-15:2
5.2 lnc-NHLH2-1:4