Transcript: lnc-NIFK-6:1

Basic information

LNCipedia transcript ID: lnc-NIFK-6:1 
LNCipedia gene ID: lnc-NIFK-6
Ensembl Gene ID: ENSG00000228400
Ensembl Transcript ID: ENST00000438816
Location (hg38): chr2:124016858-124025173
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 542 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003397; ENST00000438816.1; AC079154.1-001; OTTHUMT00000330858.1; NONHSAT074107
Alternative gene names: XLOC_002306; linc-MKI67IP-7; ENSG00000228400.1; AC079154.1; OTTHUMG00000153351.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -143.2744 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NIFK-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MKI67IP-6:1
3.1 lnc-MKI67IP-6:1
4.0 lnc-MKI67IP-6:1
4.1 lnc-MKI67IP-6:1
5.0 lnc-MKI67IP-6:1
5.1 lnc-IWS1-32:1
5.2 lnc-NIFK-6:1