Transcript: lnc-NIM1K-1:2

Basic information

LNCipedia transcript ID: lnc-NIM1K-1:2 
LNCipedia gene ID: lnc-NIM1K-1
Ensembl Gene ID: ENSG00000261604
Ensembl Transcript ID: ENST00000569313
Location (hg38): chr5:43289395-43290839
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 643 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569313.1; CTD-2636A23.2-002; OTTHUMT00000429882.1; NONHSAT101305
Alternative gene names: ENSG00000261604.1; CTD-2636A23.2; OTTHUMG00000175405.1; AC114947.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -84.9683 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NIM1K-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC114947.1.1-1:2
4.0 lnc-AC114947.1.1-1:2
4.1 lnc-AC114947.1.1-1:2
5.0 lnc-AC114947.1.1-1:2
5.1 lnc-CARD6-48:2
5.2 lnc-NIM1K-1:2