Transcript: lnc-NIM1K-3:2

Basic information

LNCipedia transcript ID: lnc-NIM1K-3:2 
LNCipedia gene ID: lnc-NIM1K-3
Location (hg38): chr5:43192231-43245362
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 555 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT101300
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -339.3888 non-coding 
CPAT coding probability 3.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NIM1K-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC114947.1.1-3:2
4.0 lnc-AC114947.1.1-3:2
4.1 lnc-AC114947.1.1-3:2
5.0 lnc-AC114947.1.1-3:2
5.1 lnc-CARD6-46:2
5.2 lnc-NIM1K-3:2