Transcript: lnc-NIM1K-5:2

Basic information

LNCipedia transcript ID: lnc-NIM1K-5:2 
LNCipedia gene ID: lnc-NIM1K-5
Location (hg38): chr5:43348329-43348672
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 344 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT101309
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.9585 non-coding 
CPAT coding probability 57.72% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NIM1K-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC114947.1.1-5:2
4.0 lnc-AC114947.1.1-5:2
4.1 lnc-AC114947.1.1-5:2
5.0 lnc-AC114947.1.1-5:2
5.1 lnc-CARD6-49:2
5.2 lnc-NIM1K-5:2