Transcript: lnc-NINJ1-2:1

Basic information

LNCipedia transcript ID: lnc-NINJ1-2:1 
LNCipedia gene ID: lnc-NINJ1-2
RefSeq ID: NR_121565
Location (hg38): chr9:93008115-93014944
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3645 bp
Exons: 3
Sources: Biogazelle lncRNA chip; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000513278; NONHSAT133226; NR_121565; NR_121565.1
Alternative gene names: ENSG00000248502; LOC101927954


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.4618 non-coding 
CPAT coding probability 70.07% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NINJ1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NINJ1-1:1
3.1 lnc-NINJ1-2:1
4.0 lnc-NINJ1-2:1
4.1 lnc-NINJ1-2:1
5.0 lnc-NINJ1-2:1
5.1 lnc-FANCC-54:1
5.2 lnc-NINJ1-2:1