Transcript: lnc-NIPSNAP3B-1:1

Basic information

LNCipedia transcript ID: lnc-NIPSNAP3B-1:1 
LNCipedia gene ID: lnc-NIPSNAP3B-1
Ensembl Gene ID: ENSG00000226334
Ensembl Transcript ID: ENST00000435915
Location (hg38): chr9:104927553-104928892
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 469 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000435915; ENST00000435915.1; RP11-217B7.2-001; OTTHUMT00000053495.1; NONHSAT133803
Alternative gene names: ENSG00000226334; RP11-217B7.2; ENSG00000226334.1; OTTHUMG00000020418.1; AL359182.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -171.4666 non-coding 
CPAT coding probability 4.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NIPSNAP3B-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NIPSNAP3B-1:1
3.1 lnc-NIPSNAP3B-1:1
4.0 lnc-NIPSNAP3B-1:1
4.1 lnc-NIPSNAP3B-1:1
5.0 lnc-NIPSNAP3B-1:1
5.1 lnc-PRPF4-134:4
5.2 lnc-NIPSNAP3B-1:1