Transcript: lnc-NKD1-3:2

Basic information

LNCipedia transcript ID: lnc-NKD1-3:2 
LNCipedia gene ID: lnc-NKD1-3
Ensembl Gene ID: ENSG00000260573
Ensembl Transcript ID: ENST00000637635
Location (hg38): chr16:50407666-50522638
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 683 bp
Exons: 5
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000637635.1
Alternative gene names: ENSG00000260573.2; RP11-21B23.3; AC007493.1; ENSG00000260573.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -6.468 non-coding 
CPAT coding probability 26.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NKD1-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-NKD1-3:2
5.0 lnc-NKD1-3:2
5.1 lnc-ADGRG1-139:1
5.2 lnc-NKD1-3:2