Transcript: lnc-NKD1-3:5

Basic information

LNCipedia transcript ID: lnc-NKD1-3:5 
LNCipedia gene ID: lnc-NKD1-3
Ensembl Gene ID: ENSG00000260573
Ensembl Transcript ID: ENST00000646992
Location (hg38): chr16:50505945-50546347
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2961 bp
Exons: 15
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000646992.1
Alternative gene names: ENSG00000260573.3; AC007493.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -23.7313 non-coding 
CPAT coding probability 2.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NKD1-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-ADGRG1-139:5
5.1 lnc-ADGRG1-139:5
5.2 lnc-NKD1-3:5