Transcript: lnc-NKX1-2-1:1

Basic information

LNCipedia transcript ID: lnc-NKX1-2-1:1 
LNCipedia gene ID: lnc-NKX1-2-1
Location (hg38): chr10:124445239-124445775
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 537 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT016815; ENST00000602332.1
Alternative gene names: ENSG00000269962.1; RP13-238F13.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -149.6958 non-coding 
CPAT coding probability 1.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NKX1-2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NKX1-2-1:1
4.0 lnc-NKX1-2-1:1
4.1 lnc-NKX1-2-1:1
5.0 lnc-NKX1-2-1:1
5.1 lnc-UROS-19:1
5.2 lnc-NKX1-2-1:1