Transcript: lnc-NKX2-3-1:1

Basic information

LNCipedia transcript ID: lnc-NKX2-3-1:1 
LNCipedia gene ID: lnc-NKX2-3-1
Location (hg38): chr10:99526948-99528466
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 730 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00017714; NONHSAT015921
Alternative gene names: XLOC_008580; linc-NKX2-3-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -188.8518 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NKX2-3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NKX2-3-1:1
3.1 lnc-NKX2-3-1:1
4.0 lnc-NKX2-3-1:1
4.1 lnc-NKX2-3-1:1
5.0 lnc-NKX2-3-1:1
5.1 lnc-SMC3-163:1
5.2 lnc-NKX2-3-1:1