Transcript: lnc-NKX2-3-1:2

Basic information

LNCipedia transcript ID: lnc-NKX2-3-1:2 
LNCipedia gene ID: lnc-NKX2-3-1
Location (hg38): chr10:99527081-99528261
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 392 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000452494; ENST00000452494.1; RP11-129J12.1-001; OTTHUMT00000049800.1; FPKM1_group_3802_transcript_1
Alternative gene names: ENSG00000228778; RP11-129J12.1; ENSG00000228778.1; OTTHUMG00000018885.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -221.6868 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NKX2-3-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NKX2-3-1:2
3.1 lnc-NKX2-3-1:2
4.0 lnc-NKX2-3-1:2
4.1 lnc-NKX2-3-1:2
5.0 lnc-NKX2-3-1:2
5.1 lnc-SMC3-163:3
5.2 lnc-NKX2-3-1:2