Transcript: lnc-NKX2-5-5:1

Basic information

LNCipedia transcript ID: lnc-NKX2-5-5:1 
LNCipedia gene ID: lnc-NKX2-5-5
Location (hg38): chr5:173199544-173199922
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 379 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT105167; FPKM1_group_26785_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.9009 non-coding 
CPAT coding probability 10.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NKX2-5-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NKX2-5-5:1
4.0 lnc-NKX2-5-5:1
4.1 lnc-NKX2-5-5:1
5.0 lnc-NKX2-5-5:1
5.1 lnc-PDLIM7-71:1
5.2 lnc-NKX2-5-5:1